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Recent Activity
All posts created by leblancstraj
| Link to this post | posted 16 Jun, 2018 02:21 | |
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In E cluster phage are often two genes in row around gene 75 in right half that are both of the same pham, 24076. The first gene is usually NKF but HHpred currently identifies it as a "DprA-like DNA processing chain A". It has good coverage 99.75 probability of 99.3%(aa 1-137 of the E cluster to aa 42-185 of the target; 1e-20). The same function is also applied to a different pham, 30776, an example of which is found in a cluster M2 phage, GenevaB15. The second pham 24076 gene in the cluster E phage is often assigned HNH endonuclease function. Is this correct?, unusual? common? |
Posted in: Functional Annotation → Two Pham 24076 genes in a row with different functions in cluster E
| Link to this post | posted 21 Jun, 2017 19:48 | |
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It helps a lot! Thank you, Claire, for this extremely helpful software. |
Posted in: PECAAN → New Features in PECAAN
| Link to this post | posted 21 Jun, 2017 19:44 | |
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I have had trouble using FireFox. Safari worked right away. Janine |
Posted in: PECAAN → Phage can not be added
| Link to this post | posted 21 Jun, 2017 13:13 | |
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How do I get the Staterator start to appear in the list for a gene? I can see Glimmer and GeneMark, but the Starterator field is blank. I can see the pham number. Also on the phage entry page, for the Starterator data file - is that the Starterator report pdf? Thanks! Janine |
Posted in: PECAAN → New Features in PECAAN