Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
Pham and Phylogenetic analysis software
| Link to this post | posted 23 Mar, 2016 14:15 | |
|---|---|
|
Which softwares are best for producing Pham circles and Phylogenetic trees like those depicted in this reference? https://www.researchgate.net/figure/250926373_fig13_A-B-Pham-circles-for-phams-3687-A-and-6944-B-Phage-names-are-organized-by Thanks for your suggestions. Greg |
| Link to this post | posted 24 Mar, 2016 17:58 | |
|---|---|
|
|
I realized I put this in the wrong place… But I also just figured out that phamerator is capable of the Pham circles. Any thoughts on Phylogenetic trees? |
| Link to this post | posted 04 Apr, 2016 18:41 | |
|---|---|
|
Hi Greg, Looks like in that paper we mention using ClustalW which has been retired in favor of ClustalOmega to generate the numbers, then NJPlot to draw the trees. –Dan |