SEA-PHAGES | Capsid maturation protease and MuF-like fusion protein

Link to this post \| posted 01 Mar, 2018 15:40
welkin	UPDATED MARCH 2021 TO REFLECT DISCUSSION BELOW Cluster B phages do not have a separate capsid maturation protease and scaffolding protein. instead, they have a great big long protein called ~~a capsid morphogenesis protein.~~ a capsid maturation protease and MuF-like fusion protein. Edited 16 Mar, 2021 18:29

Link to this post \| posted 16 Mar, 2021 14:07
NWCiowaSEAPHAGE	I don't think capsid morphogenesis protein is on the approved functions list. Could someone add it please? Thanks!

Link to this post \| posted 16 Mar, 2021 15:16
debbie	Hi Sara and students, I believe we took the function "capsid morphogenesis protein" on purpose. As I review the HHPred for this gene I am inclined to call it "capsid maturation protease and MuF-like fusion protein". What do you think? debbie

Link to this post \| posted 16 Mar, 2021 15:24
NWCiowaSEAPHAGE	We originally called it a capsid maturation protease but don't see a scaffolding protein so I thought, based on Welkin's message we should rename it. I'm good with capsid maturation protease. Maybe take this thread down. It confused us .

Link to this post \| posted 19 Dec, 2022 20:53
afreise	As of Dec 2022, are we leaving off the MuF part, based on this update from Debbie? https://seaphages.org/forums/topic/4628/ So now just: capsid maturation protease? (I am annotating Usavi (B1). The gene is here: https://phagesdb.org/genes/Usavi_CDS_10/)

Link to this post \| posted 19 Dec, 2022 21:18
debbie	Yep.

Link to this post \| posted 04 Apr, 2024 00:41
Hemiparasite	afreise As of Dec 2022, are we leaving off the MuF part, based on this update from Debbie? https://seaphages.org/forums/topic/4628/ So now just: capsid maturation protease? (I am annotating Usavi (B1). The gene is here: https://phagesdb.org/genes/Usavi_CDS_10/) In the final annotation of Usavi, would it be Usavi_9 that is the example of this call, rather than Usavi_10? https://phagesdb.org/genes/Usavi_CDS_9/

Link to this post | posted 04 Apr, 2024 00:41

Hemiparasite

afreise
As of Dec 2022, are we leaving off the MuF part, based on this update from Debbie? https://seaphages.org/forums/topic/4628/

So now just: capsid maturation protease?

(I am annotating Usavi (B1). The gene is here: https://phagesdb.org/genes/Usavi_CDS_10/)

In the final annotation of Usavi, would it be Usavi_9 that is the example of this call, rather than Usavi_10? https://phagesdb.org/genes/Usavi_CDS_9/

Link to this post \| posted 10 Apr, 2024 00:42
debbie	Hemiparasite afreise As of Dec 2022, are we leaving off the MuF part, based on this update from Debbie? https://seaphages.org/forums/topic/4628/ So now just: capsid maturation protease? (I am annotating Usavi (B1). The gene is here: https://phagesdb.org/genes/Usavi_CDS_10/) In the final annotation of Usavi, would it be Usavi_9 that is the example of this call, rather than Usavi_10? https://phagesdb.org/genes/Usavi_CDS_9/ YEP!!!

Link to this post | posted 10 Apr, 2024 00:42

debbie

Hemiparasite
afreise
As of Dec 2022, are we leaving off the MuF part, based on this update from Debbie? https://seaphages.org/forums/topic/4628/

So now just: capsid maturation protease?

(I am annotating Usavi (B1). The gene is here: https://phagesdb.org/genes/Usavi_CDS_10/)

In the final annotation of Usavi, would it be Usavi_9 that is the example of this call, rather than Usavi_10? https://phagesdb.org/genes/Usavi_CDS_9/

YEP!!!

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Capsid maturation protease and MuF-like fusion protein