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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

SEA-PHAGES Community

Forums Topics Posts Last post
Host-Range Project
A forum for discussions and questions about the SEA-PHAGES community project investigating the host range of a known panel of phages.
4 10 Feb 11, 2017
11:40 AM
Xeno Project
A forum for discussions and questions about the SEA-PHAGES community project seeking phages that are defended against by a Xeno lysogen.
4 7 Dec 16, 2016
12:12 PM
Messages for Cabrini College
1 25 May 31, 2016
11:44 AM

Science

Forums Topics Posts Last post
Phage Biology
No question is too simple or too complicated! Ask questions about phages here.
4 9 Aug 29, 2016
2:15 PM
Annotation
Questions about calling genes/tRNAs, selecting start sites, predicting functions, etc.
17 71 Feb 21, 2017
5:38 PM
Cluster-Specific Annotation Tips
This forum contains sub-forums that have specific and critical information you'll need to know when annotating phages of certain clusters.
3 3 Sep 15, 2016
2:25 PM
Lysogeny/Immunity
Questions and discussions about temperate phages, the lysogenic life cycle, genetic switches, immunity, repressors, super-infection, etc.
2 6 Feb 26, 2016
3:27 PM
Papers
Questions about or suggestions of interesting papers related to phages.
2 9 Apr 4, 2016
2:41 PM

Protocols

Forums Topics Posts Last post
Phage Discovery/Isolation
Questions about how to isolate phages from the environment, including the use of enrichment protocols to help yield.
10 68 Nov 21, 2016
7:07 PM

Software

Forums Topics Posts Last post
DNA Master
Using DNA Master to annotate and analyze phage genomes.
32 212 Feb 21, 2017
4:42 PM
Phamerator
Questions, discussions, and help related to using the comparative-genomics program Phamerator.
15 78 Feb 9, 2017
10:32 AM
SEA-PHAGES Virtual Machine
Questions related to downloading, installing, and using the SEA-PHAGES Virtual Machine.
12 70 Jan 28, 2017
10:20 PM
SEA-PHAGES App
Questions/comments/discussions related to using the SEA-PHAGES App, available on iOS and Android.
1 4 Sep 27, 2016
11:07 AM
PECAAN
A forum for questions about the Phage Evidence Collection and Annotation Network developed at Western Kentucky University.
2 3 Feb 19, 2017
3:55 PM
Consed
Questions and discussions about how to use Consed to quality-control phage genome assemblies.
2 8 Apr 6, 2016
11:38 PM
Newbler
Using 454's GS De Novo Assembler (aka Newbler) to assemble phage genomes.
0 0
Starterator
Using Starterator to compare called gene start sites across a pham, and interpreting results.
14 158 Feb 14, 2017
12:50 PM
AceUtil
Questions about using AceUtil to quality-control phage genomes.
0 0

Hosts

Forums Topics Posts Last post
Arthrobacter
Questions/comments related to using Arthrobacter species as phage hunting hosts.
1 7 Nov 2, 2016
2:23 PM
Gordonia
Questions/comments related to using Gordonia species as phage hunting hosts.
1 1 Aug 25, 2016
4:56 PM
Mycobacterium
Questions/comments related to using Mycobacterium species as phage hunting hosts.
2 12 Oct 25, 2016
11:16 PM
Rhodococcus
Questions/comments related to using Rhodococcus species as phage hunting hosts.
0 0
Streptomyces
Questions/comments related to using Streptomyces species as phage hunting hosts.
1 7 Sep 16, 2015
10:10 PM